· Y. Chan, K. Xu, J. Zhang, X. Yu and W. Liu*: XMapper - A Parallel Full Comprehensive DNA Read Mapping Algorithm Based on Intel Xeon and Xeon Phi Heterogeneous Architecture, CCF HPC China 2015(优秀论文).
· H. Lan, W. Liu*, B. Schmidt, and B. Wang: Accelerating Large-Scale Biological Database Search on Xeon Phi-based Neo-Heterogeneous Architectures, 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2015), Washington D.C., USA, November 2015.
· Q. Zheng, H. Lan, and W. Liu*: XPFS: A New Parallel PROSITE Profile Search Algorithm on Xeon Phi, IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2014), Belfast, UK, November 2014.
· S. Zhang and W. Liu*: Parallel Monte Carlo Option Pricing Algorithms on Hybrid Heterogeneous Many-Core Architectures, CCF HPC China 2014.
· L. Wang, Y. Chan, X. Duan, H. Lan, X. Meng, and W. Liu*: XSW: Accelerating Biological Database Search on Xeon Phi, the 28th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2014), Phoenix, USA, May, 2014.
· X. Duan, K. Zhao, and W. Liu* etc.: HiPGA: A High Performance Genome Assembler for Short Read Sequence Data, the 28th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2014), Phoenix, USA, May, 2014.
· K. Zhao, W. Liu, G. Voss, and W. Müller-Wittig: Accelerating de Bruijn Graph-based Genome Assembly for High-Throughput Short Read Data, the 19th IEEE International Conference on Parallel and Distributed Systems (ICPADS 2013), Korea, December, 2013.
· Y. Guo, W. Liu, B. Gong, G. Voss, and W. Müller-Wittig: GCMR: A GPU Cluster-based MapReduce Framework for Large-scale Data Processing, The 15th IEEE International Conference on High Performance Computing and Communications (HPCC 2013), Zhangjiajie, China, November 13-15, 2013.
· K. Zhao, W. Liu, G. Voss, and W. Müller-Wittig: A Dynamic Hashing approach to build de Bruijn graph for genome assembly, IEEE TENCON 2013, Xi’an, China, October 22-25, 2013.
· H. Shi, B. Schmidt, W. Liu, and W. Müller-Wittig: Parallel Mutual Information Estimation for Inferring Gene Regulatory Networks on GPUs, BMC Research Notes, DOI:10.1186/1756-0500-4-189
· W. Liu, B. Schmidt, and W. Mueller-Wittig: CUDA-BLASTP: Accelerating BLASTP on CUDA-enabled Graphics Hardware, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011 November. (Imapct factor: 2.246)
· W. Liu, B. Schmidt, Y. Liu, G. Voss, and W. Müller-Wittig: Mapping of BLASTP Algorithm onto GPU Clusters, the 17th IEEE International Conference on Parallel and Distributed Systems (ICPADS 2011), Tainan, December 7-9, 2011.
· H. Shi, W. Liu, B. Schmidt: CUDA-EC: CUDA Error Correction Method for High-Throughput Short-Read Sequencing Data, in Bioinformatics: High Performance Parallel Computer Architectures, Taylor & Francis/CRC Press, 2010.
· H. Shi, B. Schmidt, W. Liu, and W. Müller-Wittig: A Parallel Algorithm for Error Correction in High-Throughput Short-Read Data on CUDA-enabled Graphics Hardware, Journal of Computational Biology, vol. 17, no. 4, pp. 603-615, 2010. (Impact Factor: 1.694)
· H. Shi, B. Schmidt, W. Liu, and W. Müller-Wittig: Quality-Score Guided Error Correction for Short-Read Sequencing Data using CUDA, The International Conference on Computational Science 2010 (ICCS 2010), Amsterdam, Netherlands, Procedia Vol. 1, No. 1, pp. 1123-1132, 2010.
· Y. Liu, B. Schmidt, W. Liu, and D. Maskell: CUDA-MEME: Accelerating Motif Discovery in Biological Sequences Using CUDA-enabled Graphics Processing Units, Pattern Recognition Letters, in press, doi: 10.1016/j.patrec.2009.10.009. (Impact Factor: 1.772)
· H. Shi, B. Schmidt, W. Liu, and W. Müller-Wittig: Accelerating Error Correction in High-Throughput Short-Read DNA Sequencing Data with CUDA, in Proc. 23th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2009).
· B. Schmidt, C. Chen, W. Liu, W. Mitchell: PheGee@Home: A Grid-based Tool for Comparative Genomics, in Handbook of Research on Computational Grid Technologies for Life Sciences, Biomedicine and Healthcare, IGI Global, 2008.
· W. Liu, B. Schmidt, G. Voss, and W. Müller-Wittig: Accelerating Molecular Dynamics Simulations using Graphics Processing Units with CUDA, Computer Physics Communications, vol. 179, pp. 634-641, 2008. (Impact Factor: 1.958)
· A. Singh, C. Chen, W. Liu, W. Mitchell, and B. Schmidt: A Hybrid Computational Grid Architecture for Comparative Genomics, IEEE Transactions on Information Technology in Biomedicine, vol. 12, no. 2, pp. 218-225, 2008. (Impact Factor: 1.694)
· C. Chen, B. Schmidt, W. Liu, and W. Müller-Wittig:Using Graphics Hardware to Accelerate Motif Finding in DNA Sequences, Third IAPR International Conference on Pattern Recognition in Bioinformatics (PRIB’08), LNBI, Australia, 2008.
· B. Schmidt, CX. Chen, W. Liu: Hierarchical Grid Computing for High Performance Bioinformatics, in Grid Computing for Bioinformatics and Computational Biology, John Wiley & Sons, 2007.
· W. Liu, B. Schmidt, and W. Müller-Wittig: Performance Analysis of General-Purpose Computation on Commodity Graphics Hardware: A Case Study Using Bioinformatics, The Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology, vol. 48, no. 3, pp. 209-221, 2007. (Impact Factor: 0.732)
· W. Liu, B. Schmidt, G. Voss, and W. Müller-Wittig: Streaming Algorithms for Biological Sequence Alignment on GPUs, IEEE Transactions on Parallel and Distributed Systems, vol. 18, no. 9, pp. 1270-1281, 2007. (Impact Factor: 1.733)
· W. Liu, B. Schmidt, G. Voss, and W. Müller-Wittig: Molecular Dynamics Simulations on Commodity GPUs with CUDA, 14th Annual IEEE International Conference on High Performance Computing (HiPC 2007), LNCS 4873, pp. 185-196, Goa, India, December 18-21, 2007.
· M. Low, W. Liu, and B. Schmidt: A Parallel BSP Algorithm for Irregular Dynamics Programming, 7th International Symposium on Advanced Parallel Processing Technologies (APPT 2007), LNCS 4847, pp. 151-160, Guangzhou, China, 2007.
· W. Liu, B. Schmidt, and W. Müller-Wittig: Performance Predictions for General-Purpose Computation on GPUs, International Conference on Parallel Processing (ICPP 2007), Xi’an, China, September 10-14, 2007.
· J. Feng, S. Chakraborty, B. Schmidt, W. Liu, and U.D. Bordoloi: Fast Schedulability Analysis Using Commodity Graphics Hardware, 13th IEEE International Conference on Embedded and Real-Time Computing Systems and Applications (RTCSA 2007), Daegu, Korea, 2007.
· C. Chen, A. Singh, W. Liu, W. Müller-Wittig, W. Mitchell, and B. Schmidt, Phenotype Genotype Exploration on A Desktop GPU Grid, 3rd International Workshop on Grid Computing & Applications (GCA 2007), Singapore, 2007.
· W. Liu, B. Schmidt, Parallel Pattern-based Systems for Computational Biology: A Case Study, IEEE Transactions on Parallel and Distributed Systems, vol. 17, no. 8, pp. 750-763, August 2006. (Impact Factor: 1.733)
· W. Liu, B., Schmidt, Mapping of Hierarchical Parallel Genetic Algorithms for Protein Folding onto Computational Grids, IEICE Transactions on Information and Systems, E89-D(2):589-596, February 2006. (Impact Factor: 0.396)
· W. Liu, B. Schmidt, G. Voss, and W. Müller-Wittig: GPU-ClustalW: Using Graphics Hardware to Accelerate Multiple Sequence Alignment, 13th Annual IEEE International Conference on High Performance Computing (HiPC 2006), Bangalore, India, LNCS 4297, pp. 363-374, 2006.
· W. Liu, B. Schmidt, G. Voss, and W. Müller-Wittig: Bio-Sequence Database Scanning on a GPU, in Proc. 20th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2006), Rhode Island, Greece, 2006.
· W. Liu, B. Schmidt, Mapping of Hierarchical Parallel Genetic Algorithms for Protein Folding onto Computational Grids, IEEE Tencon 2005, Melbourne, Australia, 2005.
· W. Liu, B. Schmidt, A Case Study on Pattern-based Systems for High Performance Computational Biology, in Proc. 19th IEEE International Parallel & Distributed Processing Symposium (IPDPS 2005), Denver, CO, 2005.
· W. Liu, B. Schmidt: A Tunable Coarse-Grained Parallel Algorithm for Irregular Dynamic Programming Applications, 11th Annual IEEE International Conference on High Performance Computing (HiPC 2004), Bangalore, India, Springer, LNCS, 2004.
· W. Liu, B. Schmidt, A Generic Parallel Pattern-based System for Bioinformatics, Euro-Par 2004, Pisa, Italy, LNCS, Springer, 2004.
· W. Liu,B. Schmidt:Parallel Design Pattern for Computational Biology and Scientific Computing,IEEE International Conference on Cluster Computing(Cluster 2003),Hong Kong,2003.